Andrews Lab | Publications

Publications

2024

Bialy, N, Alber, F, Andrews, B, Angelo, M, Beliveau, B, Bintu, L, Boettiger, A, Boehm, U, Brown, CM, Maina, MB, Chambers, JJ, Cimini, B, Eliceiri, K, Errington, R, Faklaris, O, Gaudreault, N, Germain, RN, Goscinski, W, Grunwald, D, Halter, M, Hanein, D, Hicky, JW< Lacoste, J, Laude, A, Lundberg, E, Ma, J, Malacrida, L, Moore, J, Nelson, G, Neumann, EK, Nitschke, R, Onami, Sh, Pimentel, JA, Plant, AL, Radtke, AJ, Sabata, B, Schapiro, D, Schöneberg, J, Spraggins, JM, Sudar, D, Vierday, W-M, Volkmann, N, Wählby, C, Wang, S, Yaniv, Z, Strambio-de-Castillia, C. (2024). Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. (in review, Nature Methods) arXiv:2401.13022
Litsios, A, Grys, B, Krause, OZ, Friesen, H, Ross, C, Masinas, MPD, Forster, DT, Couvillion, MT, Timmerman, S, Billman, M, Myers, C, Johnsson, N, Churchman, S, Boone, C#, Andrews, BJ#. (2024). Proteome-scale movements and compartment-connectivity during the eukaryotic cell cycle. Cell 187, 1490–1507 https://doi.org/10.1016/j.cell.2024.02.014
Razdaibiedina, A, Brechalov, A, Friesen, H, Mattiazzi Usaj, M, Masinas, MPD, Garadi Suresh, H, Wang, K, Boone, C#, Ba, J#, Andrews, B#. (2024). PIFiA: Self-supervised Approach for Protein Functional Annotation from Single-Cell Imaging Data. Mol Syst Biol. doi: 10.1038/s44320-024-00029-6
Masinas, MPD, Litsios, A, Razdaibiedina, A, Usaj, M, Boone, C#, and Andrews, B#. (2024). Expanding TheCellVision.org: A Central Repository for Visualizing and Mining High-Content Cell Imaging Projects. Genetics. iyae044. doi: 10.1093/genetics/iyae044

2023

Billmann M, Ward HN, Aregger M, Costanzo M, Andrews BJ, Boone C, Moffat J, Myers CL. (2023). Reproducibility metrics for context-specific CRISPR screens. Cell Syst. 14(5):418-422.e2. doi: 10.1016/j.cels.2023.04.003.
Varland S, Silva RD, Kjosås I, Faustino A, Bogaert A, Billmann M, Boukhatmi H, Kellen B, Costanzo M, Drazic A, Osberg C, Chan K, Zhang X, Tong AHY, Andreazza S, Lee JJ, Nedyalkova L, Ušaj M, Whitworth AJ, Andrews BJ, Moffat J, Myers CL, Gevaert K, Boone C, Martinho RG, Arnesen T. (2023). N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity. Nat Commun. 14(1):6774. doi: 10.1038/s41467-023-42342-y.
Hieter, P., Andrews, B., Fowler, D., Bellen, H. (2023). Highlighting Rare Disease Research with a GENETICS and G3 series on Genetic Models of Rare Diseases Genetics. 224, iyad121, https://doi.org/10.1093/genetics/iyad121

2022

Yeung CHL, Sahin N, Andrews B. (2022). Phenomics approaches to understand genetic networks and gene function in yeast. Biochem Soc Trans. doi: 10.1042/BST20210285. [Epub ahead of print]
Andrews B, Chang J-B, Collinson L, Li D, Lundberg E, Mahamid J, Manley S, Mhlanga M, Nakano A, Schöneberg J, Van Valen D, Wu, TC, Zaritsky A. (2022). Imaging cell biology. Nat Cell Biol. 24, 1180–1185. doi.org/10.1038/s41556-022-00960-6

2021

Andrews BJ. (2021). A decade of G3: Genes|Genomes|Genetics: a unified home for genetics and genomics research. G3 (Bethesda). 11(9):jkab247.
Mattiazzi Usaj M, Yeung CHL, Friesen H, Boone C, Andrews BJ. (2021). Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations. Cell Syst. 12(6):608-621.
Kong KE, Fischer B, Meurer M, Kats I, Li Z, Rühle F, Barry JD, Kirrmaier D, Chevyreva V, San Luis BJ, Costanzo M, Huber W, Andrews BJ, Boone C, Knop M, Khmelinskii A. (2021). Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase. Mol Cell. 81(11):2460-2476.e11.
Rahman M, Billmann M, Costanzo M, Aregger M, Tong AHY, Chan K, Ward HN, Brown KR, Andrews BJ, Boone C, Moffat J, Myers CL. (2021). A method for benchmarking genetic screens reveals a predominant mitochondrial bias. Mol Syst Biol. 17(5):e10013.
Arita Y, Kim G, Li Z, Friesen H, Turco G, Wang RY, Climie D, Usaj M, Hotz M, Stoops EH, Baryshnikova A, Boone C, Botstein D, Andrews BJ, McIsaac RS. (2021). A genome-scale yeast library with inducible expression of individual genes. Mol Syst Biol. 17(6):e10207.
Costanzo M, Hou J, Messier V, Nelson J, Rahman M, VanderSluis B, Wang W, Pons C, Ross C, Ušaj M, San Luis BJ, Shuteriqi E, Koch EN, Aloy P, Myers CL, Boone C, Andrews B. (2021). Environmental robustness of the global yeast genetic interaction network. Science. 372(6542):eabf8424.
Kuzmin E, Rahman M, VanderSluis B, Costanzo M, Myers CL, Andrews BJ, Boone C. (2021). τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast. Nat Protoc. 16(2):1219-1250.
Brown GW, Andrews B. (2021). Setting molecular traps in yeast for identification of anticancer drug targets. Proc Natl Acad Sci U S A. 118(18):e2105547118.
Kuzmin E, Andrews BJ, Boone C. (2021). Trigenic Synthetic Genetic Array (τ-SGA) Technique for Complex Interaction Analysis. Methods Mol Biol. 2021;2212:377-400.
Mattiazzi Usaj M, Yeung CHL, Friesen H, Boone C, Andrews BJ. (2021). Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations. Cell Syst. 12(6):608-621.

2020

Suresh HG, Pascoe N, Andrews B. (2020). The structure and function of deubiquitinases: lessons from budding yeast. Open Biol. 10:200279
Kintaka R, Makanae K, Namba S, Kato H, Kito K, Ohnuki S, Ohya Y, Andrews BJ, Boone C, Moriya H. (2020). Genetic profiling of protein burden and nuclear export overload. eLife. 9:e54080
Masinas MPD, Mattiazzi Usaj M, Usaj M, Boone C, Andrews BJ. (2020). TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects. G3 (Bethesda). g3.401570.2020
van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, Roth FP, Aloy P, Andrews BJ, Boone C. (2020). Systematic analysis of bypass suppression of essential genes. Mol Syst Biol. 16(9):e9828.
Aregger M, Lawson KA, Billmann M, Costanzo M, Tong AHY, Chan K, Rahman M, Brown KR, Ross C, Usaj M, Nedyalkova L, Sizova O, Habsid A, Pawling J, Lin ZY, Abdouni H, Wong CJ, Weiss A, Mero P, Dennis JW, Gingras AC, Myers CL, Andrews BJ, Boone C, Moffat J. (2020). Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. Nat Metab. 2(6):499-513.
Kuzmin E, VanderSluis B, Nguyen Ba AN, Wang W, Koch EN, Usaj M, Khmelinskii A, Usaj MM, van Leeuwen J, Kraus O, Tresenrider A, Pryszlak M, Hu MC, Varriano B, Costanzo M, Knop M, Moses A, Myers CL, Andrews BJ, Boone C. (2020). Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science. 368(6498):eaaz5667.
Mattiazzi Usaj M, Sahin N, Friesen H, Pons C, Usaj M, Masinas MPD, Shuteriqi E, Shkurin A, Aloy P, Morris Q, Boone C, Andrews BJ (2020). Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability. Mol Syst Biol. 16(2):e9243.

2019

Mair B, Moffat J, Boone C, Andrews BJ. (2019) Genetic interaction networks in cancer cells. Curr Opin Genet Dev. 54:64-72.
Costanzo M, Kuzmin E, van Leeuwen J, Mair B, Moffat J, Boone C, Andrews B. (2019) Global Genetic Networks and the Genotype-to-Phenotype Relationship. Cell. 21;177(1):85-100.
Hou J, Tan G, Fink GR, Andrews BJ, Boone C. (2019) Complex modifier landscape underlying genetic background effects. Proc Natl Acad Sci USA. 116(11):5045-5054.

2018

VanderSluis B, Costanzo M, Billmann M, Ward HN, Myers CL, Andrews BJ, Boone C. (2018) Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell. Curr Opin Microbiol. 45:170-179.
Hou J, van Leeuwen J, Andrews BJ, Boone C. (2018) Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression. Trends Genet. 34(8):578-586.
Kuzmin E, VanderSluis B, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A, Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Wang JZY, Hanchard J, Riggi M, Xu K, Heydari H, San Luis BJ, Shuteriqi E, Zhu H, Van Dyk N, Sharifpoor S, Costanzo M, Loewith R, Caudy A, Bolnick D, Brown GW, Andrews BJ, Boone C, Myers CL. (2018). Systematic analysis of complex genetic interactions. Science, 360(6386).
Lu AX, Chong YT, Hsu IS, Strome B, Handfield LF, Kraus O, Andrews BJ, Moses AM. (2018). Integrating images from multiple microscopy screens reveals diverse patterns of change in the subcellular localization of proteins. Elife, 7:e31872.

2017

van Leeuwen J, Pons C, Boone C, Andrews BJ. (2017). Mechanisms of suppression: The wiring of genetic resilience. Bioessays, 39(7).
Grys BT, Lo DS, Sahin N, Kraus OZ, Morris Q, Boone C, Andrews BJ. (2017). Machine learning and computer vision approaches for phenotypic profiling. J Cell Biol., 216(1):65-71.
Hart T, Tong AHY, Chan K, Van Leeuwen J, Seetharaman A, Aregger M, Chandrashekhar M, Hustedt N, Seth S, Noonan A, Habsid A, Sizova O, Nedyalkova L, Climie R, Tworzyanski L, Lawson K, Sartori MA, Alibeh S, Tieu D, Masud S, Mero P, Weiss A, Brown KR, Usaj M, Billmann M, Rahman M, Constanzo M, Myers CL, Andrews BJ, Boone C, Durocher D, Moffat J. (2017). Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens. G3 (Bethesda), 7(8):2719-2727.
Verster AJ, Styles EB, Mateo A, Derry WB, Andrews BJ, Fraser A. (2017). Taxonomically Restricted Genes with Essential Functions Frequently Play Roles in Chromosome Segregation in Caenorhabditis elegans and Saccharomyces cerevisiae. G3 (Bethesda), [Epub ahead of print].
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, Okamoto R, Yoshimura M, DeRango-Adem E, van Leeuwen J, Shirahige K, Baryshnikova A, Brown GW, Hirano H, Costanzo M, Andrews B, Ohya Y, Osada H, Yoshida M, Myers CL, Boone C. (2017). Functional annotation of chemical libraries across diverse biological processes. Nat Chem Biol., 13(9):982-993.
Yang F, Sun S, Tan G, Costanzo M, Hill DE, Vidal M, Andrews BJ, Boone C, Roth FP. (2017). Identifying pathogenicity of human variants via paralog-based yeast complementation. PLoS Genet., 13(5):e1006779.
Kraus OZ, Grys BT, Ba J, Chong Y, Frey BJ, Boone C, Andrews BJ. (2017). Automated analysis of high-content microscopy data with deep learning. Mol Syst Biol., 13(4):924.
Usaj M, Tan Y, Wang W, VanderSluis B, Zou A, Myers CL, Costanzo M, Andrews B, Boone C. (2017). TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network. G3 (Bethesda), 7(5):1539-1549.
Youn JY, Friesen H, Nguyen Ba AN, Liang W, Messier V, Cox MJ, Moses AM, Andrews B. (2017). Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. G3 (Bethesda), 7(3):911-921.

2016

van Leeuwen J, Pons C, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Ušaj MM, Pechlaner M, Takar M, Ušaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, Cao J, Cote A, Gebbia M, Horecka G, Horecka I, Kuzmin E, Legro N, Liang W, van Lieshout N, McNee M, San Luis BJ, Shaeri F, Shuteriqi E, Sun S, Yang L, Youn JY, Yuen M, Costanzo M, Gingras AC, Aloy P, Oostenbrink C, Murray A, Graham TR, Myers CL, Andrews BJ, Roth FP, Boone C. (2016). Exploring genetic suppression interactions on a global scale. Science, 354(6312).
Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, Luke B, Muzi-Falconi M, Myers CL, Mitra RD, Shore D, Brown GW, Zhang Z, Boone C, Andrews BJ. (2016). Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Syst., 3(3):264-277.e10.
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, Lin ZY, Kuzmin E, Nelson J, Piotrowski JS, Srikumar T, Bahr S, Chen Y, Deshpande R, Kurat CF, Li SC, Li Z, Usaj MM, Okada H, Pascoe N, San Luis BJ, Sharifpoor S, Shuteriqi E, Simpkins SW, Snider J, Suresh HG, Tan Y, Zhu H, Malod-Dognin N, Janjic V, Przulj N, Troyanskaya OG, Stagljar I, Xia T, Ohya Y, Gingras AC, Raught B, Boutros M, Steinmetz LM, Moore CL, Rosebrock AP, Caudy AA, Myers CL, Andrews B, Boone C. (2016). A global genetic interaction network maps a wiring diagram of cellular function. Science, 353(6306).
Mattiazzi Usaj M, Styles EB, Verster AJ, Friesen H, Boone C, Andrews BJ. (2016). High-Content Screening for Quantitative Cell Biology. Trends Cell Biol., 26(8):598-611.

2015

Chong YT, Koh LY, Friesen H, Kaluarachchi S, Cox MJ, Moses A, Moffat J, Boone C, and Andrews BJ. (2015). Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis. Cell, 161(6):1413-24.
Koh JLY, Chong YT, Friesen H, Moses A, Boone C, Andrews BJ and Moffat J. (2015). CYCLoPs: a comprehensive database constructed from automated analysis of protein abundance and sub-cellular localization patterns in Saccharomyces cerevisiae. G3, 5(6):1223-32

2014

Rossi D, Galvão FC, Bellato HM, Boldrin PE, Andrews BJ, Valentini SR, Zanelli CF. (2014). eIF5A has a function in the cotranslational translocation of proteins into the ER. Amino Acids, 46(3):645-53.
Parts L, Liu Y-C, Tekkedil MM, Steinmetz LM, Caudy AA, Fraser AG, Boone C*, Andrews BJ*, Rosebrock AP*. (2014). Genetic basis of single cell protein level variation in yeast. Genome Research, 24(8):1363-70.
Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Andrews BJ*, Boone C*. (2014). Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods Mol Biol, 1205:143-68.
Kurat CF, Lambert J-P, Petschnigg J, Friesen H, Pawson T, Rosebrock A, Gingras A-C, Fillingham J, and Andrews BJ. (2014). A cell cycle-regulated oscillator coordinates core histone gene transcription by histone acetylation. PNAS, 111(39):14124-9.

2013

Bastajian N, Friesen H, Andrews BJ. (2013). Bck2 interacts with MADS box protein Mcm1 on cell cycle-regulated promoters to activate M/G1 phase transcription in budding yeast. PLoS Genetics, 9(5):e1003507.
Wagih O, Usaj M, Baryshnikova A, VanderSluis B, Kuzmin E, Costanzo M, Myers C, Andrews BJ, Boone C, Parts L. (2013). SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research, W591-6.
Handfield L-F, Chong YT, Simmons J, Andrews BJ, Moses AM (2013). Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins. PLoS Computational Biology, 9(6):e1003085.
Neumuller RA, Gross T, Samsonova A, Vinayagam A, Buckner M, Founk K, Hu, Yanhui, Sharifpoor S, Rosebrock A, Andrews B, Winston F and Perrimon N. (2013). Conserved regulators of nucleolar size revealed by global phenotypic analyses. Sci Signal, 6(289):ra70.
Baryshnikova A, VanderSluis B, Constanzo M, Myers CL, Cha* RS, Andrews B* and Boone C*. (2013). Global linkage map connects meiotic centromere function to chromosome size in budding yeast. G3, 6(289):ra70.
Vizeacoumar, FJ, Arnold R, Vizeacoumar FS, Chandrashekhar M, Buzina A, Young JTF, Kwan, JHM, Sayad A, Mero P, Lawo S, Tanaka H, Brown KR, Baryshnikova A, Mak AB, Fedyshyn Y, Wang Y, Brito GC, Kasimer D, Makhnevych T, Ketela T, Datti A, Babu M, Emili A, Pelletier L, Wrana J, Wainberg Z, Kim PM, Rottapel R, O’Brien CA, Andrews B, Boone C and Moffat J. (2013). A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. Molecular Systems Biology, 9:696.

2012

Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ. (2012). Functional analysis with a barcoder yeast gene overexpression system. G3, 2(10):1279-89.
Kaluarachchi Duffy S,Friesen H, Baryshnikova A, Lambert JP, Chong YT, Figeys D, Andrews BJ. (2012). Exploring the yeast acetylome using functional genomics. Cell, 149(4):936-48.
Nguyen Ba AN, Yeh BJ, van Dyk D, Davidson AR, Andrews BJ, Weiss EL, Moses AM. (2012). Proteome-wide discovery of evolutionary conserved sequences in disordered regions. Sci Signal, 15(215):rs1.
Sharifpoor S, van Dyk D, Costanzo M, Baryshnikova A, Friesen H, Douglas AC, Youn JY, Vandersluis B, Myers CL, Papp B, Boone C, Andrews BJ. (2012). Functional wiring of the yeast kinome revealed by global analysis of network motifs. Genome Res, 22(4):791-801.

2011

Kurat CF, Lambert JP, van Dyk D, Tsui K, van Bakel H, Kaluarachchi S, Friesen H, Kainth P, Nislow C, Figeys D, Fillingham J, Andrews BJ. (2011). Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundry protein. Genes Dev, 25(23):2489-501.
Sharifpoor S, Nguyen Ba AN, Youn JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ. (2011). A quantitative literature-curated gold standard for kinase-substrate pairs. Genome Biol, 12(4):R39.
Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, Lu H, Yan Z, Jin K, Barker S, Datti A, Giaever G, Nislow C, Bulawa C, Myers CL, Costanzo M, Gingras AC, Zhang Z, Blomberg A, Bloom K, Andrews B, Boone C. (2011). Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nat Biotechnol, 29(4):361-7.
Magtanong L, Ho CH, Barker SL, Jiao W, Baryshnikova A, Bahr S, Smith AM, Heisler LE, Choy JS, Kuzmin E, Andrusiak K, Kobylianski A, Li Z, Costanzo M, Basrai MA, Giaever G, Nislow C, Andrews B, Boone C. (2011). Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nat Biotechnol, 29(6):505-11.

2010

Youn JY, Friesen H, Kishimoto T, Henne WM, Kurat CF, Ye W, Ceccarelli DF, Sicheri F, Kohlwein SD, McMahon HT, Andrews BJ. (2010). Dissecting BAR domain function in the yeast Amphiphysins Rvs161 and Rvs167 during endocytosis. Mol Biol Cell, 21(17):3054-69.
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C. (2010). The genetic landscape of a cell. Science, 327(5964):425-31.
VanderSluis B, Bellay J, Musso G, Costanzo M, Papp B, Vizeacoumar FJ, Baryshnikova A, Andrews B, Boone C, Myers CL. (2010). Genetic interactions reveal the evolutionary trajectories of duplicate genes. Mol Syst Biol, 6:429.
Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, Brown GW, Andrews B, Boone C, Myers CL. (2010). Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat Methods, 7(12):1017-24.
Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, Andrews BJ. (2010). Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. J Cell Biol, 188(1):69-81.
Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C. (2010). Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Methods Enzymol, 470:145-79.
Kainth P, Andrews B. (2010). Quantitative cell array screening to identify regulators of gene expression. Brief Funct Genomics, 9(1):13-23.
Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. (2010). DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Res, 38(Database issue):D502-7.
Kahana S, Pnueli L, Kainth P, Sassi HE, Andrews B, Kassir Y. (2010). Functional dissection of IME1 transcription using quantitative promoter-reporter screening. Genetics, 186(3):829-41.
Liu C, van Dyk D, Xu P, Choe V, Pan H, Peng J, Andrews B, Rao H. (2010). Ubiquitin chain elongation enzyme Ufd2 regulates a subset of Doa10 substrates. J Biol Chem, 285(14):10265-72.
Traven A, Lo TL, Pike BL, Friesen H, Guzzo J, Andrews B, Heierhorst J. (2010). Dual functions of Mdt1 in genome maintenance and cell integrity pathways in Saccharomyces cerevisiae. Yeast, 27(1):41-52.